miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164570342|gb|AM857186.1|AM857186 TCAGAAGATCATTTCGACGAATTAAGCGAGCTTTTCCATCTAGCATCTAATTTTGTGCGATCTTCCACGAATAGCTTTAA
CCAAGAGCAGCTTCTCTATTTGTATGCTAGGTTTAAGCAGGCTAATGATGGACCTTGTTTTGTTTCTAAGCCTGGAATGT
TTGACTTTCAAGGGAAAAGAAAGTGGGAAGCATGGAAAAGCTTGGAAAATAAAACCAGAGAGGAAGCAATGAAAGAGTAT
ACATCAAAGGTGACCTTAACTGTGCCAGACTGGAATTTGCAGTTTGACAGGAGACAGGCTGGTGATGGGTGGGTAGGTGT
CAGCACAATGTCCAACACAGACACAGTGATTGAGGACAGAAACAAGACGGCCTTTGATTGGTGCAAGGATGGGGATACAA
AGCATCTACTGCACTATCTAAAGACCACCAAAACAAACATCAACAAACAGGATGAAAATGGAATGACTATACTTCACTGG
ACATGTGATAGAGGCAACATTGAAATGTTAGATGCTCTTCTTGGCCTCAAAGCTGATCCAAATATACAGGATAATGATGG
ACAAAGTCCTCTGCATTATGCGGTGAGTTGTGAGCACCAGGATATTGTGGAAAGACTGCTGAAGACCAGCATCAACCTAA
AGCTTCAGGATGTAGATGGTCTCACAATTACAGACATTGAAACCACTCCAGAGATAAAGCACTTGCTAGAACAATATGTT
ACCTGATATATGCTTCA




Most similar to sp|A2VDR2|ACBD6_BOVIN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6
           OS=Bos taurus GN=ACBD6 PE=2 SV=1
          Length = 282

 Score =  191 bits (484), Expect = 6e-48
 Identities = 96/239 (40%), Positives = 147/239 (61%), Gaps = 5/239 (2%)
 Frame = +1

Query: 22  LSELFHLASNFVRSSTNSFNQEQLLYLYARFKQANDGPCFVSKPGMFDFQGKRKWEAWKS 201
           L ELF  A+  ++      ++EQLLYLYAR+KQ   G C   KP  FDF+GK+KWEAWK+
Sbjct: 42  LPELFEKAAEHLQGLVQVASREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKA 101

Query: 202 LENKTREEAMKEYTSKVTLTVPDWNLQFDRR---QAGDGWVG--VSTMSNTDTVIEDRNK 366
           L + +  +AM+EY + V    P WN Q   +   +A  G+ G  VS++ + + +I + +K
Sbjct: 102 LGDSSPSQAMQEYIAVVKKLDPSWNPQSPEKKGKEANTGFGGPVVSSLYHEE-IIREEDK 160

Query: 367 TAFDWCKDGDTKHLLHYLKTTKTNINKQDENGMTILHWTCDRGNIEMLDALLGLKADPNI 546
             FD+C++ +  H+   +KT   ++N +DE G T+LHW CDRG+ E++  LL  +AD N 
Sbjct: 161 DIFDYCRENNIDHITKVIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQYRADINC 220

Query: 547 QDNDGQSPLHYAVSCEHQDIVERLLKTSINLKLQDVDGLTITDIETTPEIKHLLEQYVT 723
           QDN+GQ+ LHYA +CE  DIVE LL++  +  L+D DG    ++     +  +L+Q+ T
Sbjct: 221 QDNEGQTALHYAAACEFLDIVELLLQSGADPTLRDQDGCLPEEVTGCKAVTLMLQQHTT 279